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SRX27136098: Root samples from oak (Quercus robur) Control treatment Box1 R31_bacteria_rep1
1 ILLUMINA (Illumina MiSeq) run: 34,052 spots, 18.5M bases, 9.1Mb downloads

Design: Amplicon sequencing
Submitted by: Leibniz Institute for Agricultural Engineering and Bioeconomy
Study: Plant microbiome assembly in a changing environment Raw sequence reads
show Abstracthide Abstract
Despite that climate change is currently one of the most pervasive challenges, its effects on the plant-associated microbiomes is still poorly studied. The aim of this study was to evaluate the impact of climate warming and drought stress on the microbiome assembly of oak plants from seed to seedling. In a multifactorial experimental set up, acorns were subjected to different temperature (15, 20 and 25 degree Celsius) and soil moisture levels (drought and control) from germination until the seedling stage, after which the bacterial and fungal communities associated with the rhizosphere and phyllosphere of the seedlings were analyzed. The interaction of temperature and drought affected both the bacterial and the fungal communities, with the latter being more strongly affected. This effect was more significant in the phyllosphere and contrasting depending on soil moisture level. Both temperature and drought affect the microbial community composition with more profound effect in the rhizosphere. Regardless of temperature, Actinobacteriota was significantly enriched in drought conditions. This study provides new insights into climate change related impacts on the plant-associated microbiota of a major forest tree species such as oak.
Sample: B_R31
SAMN44940431 • SRS23591643 • All experiments • All runs
Library:
Name: B_R31
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 34,052 spots, 18.5M bases, 9.1Mb
Run# of Spots# of BasesSizePublished
SRR3177419934,05218.5M9.1Mb2024-12-19

ID:
36619917

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